Papers on genetic interactions in Mammalia

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Gale GD, Yazdi RD, Khan AH, Lusis AJ, Davis RC, Smith DJ
A genome-wide panel of congenic mice reveals widespread epistasis of behavior quantitative trait loci.
2008 Apr, Mol. Psychiatry, [Epub ahead of print]
applications » disease association studiesMus musculus
Bochdanovits Z, Sondervan D, Perillous S, van Beijsterveldt T, Boomsma D, Heutink P
Genome-wide prediction of functional gene-gene interactions inferred from patterns of genetic differentiation in mice and men.
2008 Feb, PLoS ONE, 3(2):e1593
applications » disease association studiesHomo sapiens, Mus musculus
The Wellcome Trust Case Control Consortium
Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.
2007 Jun, Nat. Genet., 447:661-678
applications » disease association studiesHomo sapiens
Pickrell J., Clerget-Darpoux F., Bourgain C.
Power of genome-wide association studies in the presence of interacting loci.
2007 May, Genet. Epidemiol., [Epub ahead of print]
applications » disease association studiesHomo sapiens
Yi N., Banerjee S., Pomp D., Yandell B.
Bayesian mapping of genome-wide interacting QTL for ordinal traits.
2007 May, Genetics, [Epub ahead of print]
applications » disease association studiesMus musculus
Lehner B.
Modelling genotype-phenotype relationships and human disease with genetic interaction networks.
2007 May, J. Exp. Biol., 210(Pt 9):1559-1566
applications » disease association studies

discovery » techniques

Saccharomyces cerevisiae, Homo sapiens, Caenorhabditis elegans
Park M. Y., Hastie T.
Penalized logistic regression for detecting gene interactions.
2007 Apr, Biostatistics, 9(1):30-50
interpretation & analysis

applications » disease association studies

Homo sapiens
Lin M., Li H., Hou W., Johnson J. A., Wu R.
Modelling sequence-sequence interactions for drug response.
2007 Mar, Bioinformatics, 23(10):1251-1257
discovery

applications » disease association studies » drug response

multiple perturbationsareas » chemical-genetic interactions » adverse drug response

Homo sapiens
Onay V. U., Briollais L., Knight J. A., Shi E., Wang Y., Wells S., Li H., Rajendram I., Andrulis I. L., Ozcelik H.
SNP-SNP interactions in breast cancer susceptibility.
2006 May, BMC Cancer, 6:114
applications » disease association studies » cancerHomo sapiens
Hartwell L. H.
Yeast and cancer.
2004 Aug, Biosci. Rep., 24(4-5):523-544
interpretation & analysis

applications » disease association studies » cancer

Saccharomyces cerevisiae, Homo sapiens
Brummelkamp T. R., Bernards R.
New tools for functional mammalian cancer genetics.
2003 Jan, Nat. Rev. Cancer, 3:781-789
discovery » techniques » RNAiMammalia
Moore J. H.
The ubiquitous nature of epistasis in determining susceptibility to common human diseases.
2003 Jan, Hum. Hered., 56(1-3):73-82
applications » disease association studiesHomo sapiens
Badano J. L., Katsanis N.
Beyond Mendel: an evolving view of human genetic disease transmission.
2002 Jan, Nat. Rev. Genet., 3:779-789
applications » disease association studiesHomo sapiens
Cordell H. J.
Epistasis: what it means, what it doesn't mean, and statistical methods to detect it in humans.
2002 Jan, Hum. Mol. Genet., 11(20):2463:2468
applications » disease association studiesHomo sapiens
Ritchie M.D., Hahn L.W., Roodi N., Renee Bailey L.R., Dupont W.D., Parl F.F., Moore J.H.
Multifactor-Dimensionality Reduction Reveals High-Order Interactions among Estrogen-Metabolism Genes in Sporadic Breast Cancer.
2001 Jan, Am. J. Hum. Genet., 69:138-147
applications » disease association studies

discovery » techniques

Homo sapiens
Fearon E. R., Vogelstein B. A.
A genetic model for colorectal tumorigenesis.
1990 Jan, Cell, 61:759-767
applications » disease association studies » cancerHomo sapiens

 

© 2007—2008 Anastasia Baryshnikova (a.baryshnikova@utoronto.ca), graduate student with Charlie Boone and Gary Bader at the University of Toronto.